BEGIN:VCALENDAR
VERSION:2.0
PRODID:Linklings LLC
BEGIN:VTIMEZONE
TZID:America/Chicago
X-LIC-LOCATION:America/Chicago
BEGIN:DAYLIGHT
TZOFFSETFROM:-0600
TZOFFSETTO:-0500
TZNAME:CDT
DTSTART:19700308T020000
RRULE:FREQ=YEARLY;BYMONTH=3;BYDAY=2SU
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:-0500
TZOFFSETTO:-0600
TZNAME:CST
DTSTART:19701101T020000
RRULE:FREQ=YEARLY;BYMONTH=11;BYDAY=1SU
END:STANDARD
END:VTIMEZONE
BEGIN:VEVENT
DTSTAMP:20260202T201247Z
LOCATION:Second Floor Atrium
DTSTART;TZID=America/Chicago:20251120T080000
DTEND;TZID=America/Chicago:20251120T170000
UID:submissions.supercomputing.org_SC25_sess533_post213@linklings.com
SUMMARY:A Kokkos-Based Proxy of the Exascale Metagenome Assembler MetaHipM
 er2: A First Use of Kokkos for Computational Biology
DESCRIPTION:Logan Williams, Gavin Conant, and Michela Becchi (North Caroli
 na State University) and Jan Ciesko and Amy Powell (Sandia National Labora
 tories)\n\nInexpensive DNA sequencing [1] has opened new windows into biol
 ogical complexity. These include metagenomics: the ability to catalog a mi
 crobial ecosystem by extracting and sequencing DNA directly from an enviro
 nment. Analyzing metagenomic-scale datasets often requires exascale comput
 ing. Such computing platforms are heterogeneous, encompassing CPUs, GPUs, 
 FPGAs or other co-processors. This heterogeneity presents complications fo
 r software design. The programming models can require code rewrites when h
 ardware changes. Moreover, achieving adequate performance requires underst
 anding the interaction between hardware and programming models. Computatio
 nal biology codes suffer particularly from these problems because they are
  poorly studied [2] [3]. Here we describe a proxy application based on a m
 etagenome assembler which allows both machine profiling and studying co-pr
 ocessor behavior for biology codes.\n\nTag: Research & ACM SRC Posters\n\n
 Registration Category: Technical Program Reg Pass\n\nSession Chairs: Kento
  Sato (RIKEN Center for Computational Science (R-CCS)); Chris Schlipalius 
 (Pawsey Supercomputing Research Centre; Commonwealth Scientific and Indust
 rial Research Organisation (CSIRO), Australia); and Anja Gerbes (Georg-Aug
 ust-Universität Göttingen)\n\n
END:VEVENT
END:VCALENDAR