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UID:submissions.supercomputing.org_SC25_sess205@linklings.com
SUMMARY:The 11th Computational Approaches for Cancer Workshop (CAFCW25)
DESCRIPTION:As cancer research becomes increasingly data-driven, the impac
 t of high performance computing continues to grow, bridging the gap betwee
 n scientific discovery and clinical application. HPC plays a transformativ
 e role in advancing cancer research and improving patient care by enabling
  the analysis of complex, large-scale biological data at unprecedented spe
 ed and scale. These capabilities accelerate the development of precision m
 edicine approaches, allowing for more accurate diagnoses and tailored ther
 apies. In addition, HPC supports large-scale clinical data integration, he
 lping to uncover patterns and outcomes that inform evidence-based care.\n\
 n\nThis year's workshop will bring together a wide range of researchers in
 terested in advancing the use of computation to better understand, diagnos
 e, treat, and prevent cancer. Participants include clinicians, cancer biol
 ogists, mathematicians, data scientists, computational scientists, enginee
 rs, developers, vendors, thought leaders – and students. The special empha
 sis for CAFCW25 will build on the theme 'HPC Ignites Innovations in Cancer
  Research and Care' with presenters who show novel uses of HPC technologie
 s in enabling efforts, clinical applications, translation for patient impa
 ct, and improving communication with visualization and education around ca
 ncer.\n\nBayesian Inference for Patient-Specific Digital Twins in Oncology
 \n\nPredictive digital twins are poised to make an impact in the bourgeoni
 ng field of precision oncology by coupling mathematical and computational 
 models with patient-specific data. The inherent inter-patient heterogeneit
 y in cancer physiology and response to therapy hinders development of ther
 apies at...\n\n\nGraham Pash, Umberto Villa, David Hormuth II, Thomas Yank
 eelov, and Karen Willcox (University of Texas at Austin, Oden Institute)\n
 ---------------------\nStretch Break\n---------------------\nAn AI Agentic
  Framework for Understanding Low-Dose Radiation Effects on Human Lung Epit
 helial Cells\n\nWhile data modalities like scRNASeq, histology, and DNA me
 thylation offer valuable insights into cellular responses to external pert
 urbations, learning from such datasets is often limited by the user’s abil
 ity to analyze large data, and familiarity with the existing knowledge bas
 e and tools. M...\n\n\nJoshua-James Claybon (Argonne National Laboratory (
 ANL), Rice University); Sohum Kashyap (Argonne National Laboratory (ANL), 
 Illinois Mathematics and Science Academy); Mitchell Conery, Alex Rodriguez
 , and Zilinghan Li (Argonne National Laboratory (ANL)); John Wu (Argonne N
 ational Laboratory (ANL), Harvard University); and Tarak Nandi and Ravi Ma
 dduri (Argonne National Laboratory (ANL))\n---------------------\nProgramm
 atic Innovations in Cancer Team Data Science\n\nInnovation in cancer care 
 and research come about in many ways. High performance computing (HPC) has
  expanded the frontier for innovation in cancer and promises accelerated i
 mpact on the massive challenge of cancer. Yet even with visionary inspirat
 ion, vast quantities of data, and a growing capacity...\n\n\nEric A. Stahl
 berg, Bissan Al-Lazikani, Heiko Enderling, Jeffrey H. Siewerdsen, Linghua 
 Wang, Yinyin Yuan, Amy Moreno, Stephanie T. Schmidt, Andrea Hawkins-Daarud
 , Shuhan Yang, David A. Jaffray, and Caroline Chung (The University of Tex
 as MD Anderson Cancer Center)\n---------------------\nWrap up and closing 
 remarks\n---------------------\niSTaRT - in Silico Targeted Radionuclide T
 herapy: Designing Inhibitor-Chelator Conjugates\n\niSTaRT - in Silico Targ
 eted Radionuclide Therapy: Designing Inhibitor-Chelator Conjugates\n\nTarg
 eted radiopharmaceutical therapy (TRT) offers a precise and potent cancer 
 treatment modality by delivering radioactive payloads directly to tumor ce
 lls. However, designing effective TRT agents - those that...\n\n\nDebsindh
 u Bhowmik (Oak Ridge National Laboratory) and John Vant and Van Ngo (Oak R
 idge National Laboratory (ORNL))\n---------------------\nPoster Session Hi
 ghlights\n---------------------\nPathLlama: A Language Model for Automated
  Cancer Surveillance\n\nTransforming unstructured information into structu
 red common\ndata models (CDM) is a critical step for enabling cancer\nsurv
 eillance and advancing precision medicine. CDMs standardize\nthe structure
  and content of oncologic data extracted\nfrom electronic health records. 
 Unfortunately, traditional Extra...\n\n\nPatrycja Krawczuk, John Gounley, 
 Abhishek Shivanna, and Mayanka Chandrashekar (Oak Ridge National Laborator
 y (ORNL)); Elizabeth Hsu (National Cancer Institute); and Heidi Hanson (Oa
 k Ridge National Laboratory (ORNL))\n---------------------\nMorning Break 
 - Computational Approaches for Cancer Workshop (CAFCW25)\n----------------
 -----\nPathPCNet: Pathway Principal Component-Based Interpretable Framewor
 k for Drug Sensitivity Prediction\n\nBackground: Precision medicine aims t
 o identify significant biomarkers and effective drugs based on individual 
 genomic profiles, enabling personalized treatment strategies. Drug efficac
 y is commonly assessed via drug response, typically measured by the concen
 tration required to inhibit a biological ...\n\n\nBikhyat Adhikari, Masrur
  Sobhan, Ananda Sutradhar, Giri Narasimhan, and Ananda Mohan Mondal (Flori
 da International University)\n---------------------\nThe Eleventh Computat
 ional Approaches for Cancer Workshop (CAFCW25)\n\nThe importance of high p
 erformance computing is ever increasing as a critical component of cancer 
 research and clinical applications. The current global cancer ecosystem in
 cludes new scientific methods, AI, ever expanding sources of data, and use
  of simulations. These dynamic changes have set the st...\n\n\nEric Stahlb
 erg (The University of Texas MD Anderson Cancer Center), Patricia Kovatch 
 (Icahn School of Medicine at Mount Sinai), Lauren Lewis (Frederick Nationa
 l Laboratory for Cancer Research), Sally Ellingson (University of Kentucky
  Markey Cancer Center), Lynn Borkon (Frederick National Laboratory for Can
 cer Research), and Sean Hanlon (National Cancer Institute)\n--------------
 -------\nPanel Session #1: AI, Cancer, the Future\n\nSally Ellingson (Univ
 ersity of Kentucky), Heidi Hanson (Oak Ridge National Laboratory (ORNL)), 
 Eric Stahlberg, and Sunita Chandrasekaran (University of Delaware)\n\nReco
 rding: Livestreamed, Recorded\n\nRegistration Category: Technical Program 
 Reg Pass, Workshop Reg Pass\n\nSession Chairs: Eric Stahlberg (MD Anderson
  Cancer Center, University of Texas); Sally Ellingson (University of Kentu
 cky); Lynn Borkon (Frederick National Laboratory for Cancer Research); Pat
 ricia Kovatch (Icahn School of Medicine at Mount Sinai); Lauren Lewis (Fre
 derick National Laboratory for Cancer Research); and Sean Hanlon (National
  Institutes of Health (NIH), National Cancer Institute (NCI))
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